<#1940 Add test data for non-random UMI support> P...
# test-data
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#1940 Add test data for non-random UMI support Pull request opened by znorgaard Summary Adds test data for non-random (fixed) UMI support in nf-core/fastquorum. New files •
testdata/fastqs/synthetic-nonrandom-umi/
— Synthetic paired-end FASTQs (
8M+T 8M+T
read structure) generated from the existing SRR6109255 tiny FASTQs by trimming the original 10bp random UMIs + 1bp spacer, mapping them deterministically to 32 IDT xGen cfDNA fixed UMIs, and introducing 1bp errors in ~10% of UMIs •
testdata/umis/idt-xgen-cfdna-umis.txt
— The 32 IDT xGen cfDNA fixed UMI sequences (8bp each) •
testdata/samplesheets/samplesheet.nonrandom.csv
— Sample sheet where all samples use
umi_file
•
testdata/samplesheets/samplesheet.mixed_umis.csv
— Sample sheet with a mix of fixed UMI (with
umi_file
) and random UMI (without
umi_file
) samples 🤖 Generated with Claude Code nf-core/test-datasets
Review on #1940 Add test data for non-random UMI support Review approved by nh13 on znorgaard's pull request Thank-you, the updated changes look great! nf-core/test-datasets