Hello everyone I'm getting the following error wh...
# sarek
k
Hello everyone I'm getting the following error when I run the SAREK pipeline on WGS cram files.
-[nf-core/sarek] Pipeline completed with errors-
Join mismatch for the following entries:
- key=[id:BS_2VB8649B_vs_BS_CW6NWAWQ, normal_id:BS_CW6NWAWQ, patient:C90159, sex:NA, tumor_id:BS_2VB8649B, contamination:null] values=
- key=[id:BS_5TT6TT4K_vs_BS_CW6NWAWQ, normal_id:BS_CW6NWAWQ, patient:C90159, sex:NA, tumor_id:BS_5TT6TT4K, contamination:null] values=
I'm using:
nf-core/sarek version: 3.8.1
Nextflow version: 25.10.4
Executor: SLURM
Container: Singularity
I'm attaching the samplesheet, nextflow_config, SAREK command script, and nextflow log here. Any help is appreciated. Thank you in advance. Please help