Hi. So I'm now in pond lab at temple, where hyphy is developed. This is very cool. We've a nf workflow ourselves that while built on nf-core framework we didn't propose to submit here. It's meant for exploring across viral genomes rather than specific genes, starts w unaligned fasta. Well possibly make others, also w specific purposes. Might be nice to share notes though, pull from a consistent pool of shared modules and subworkflows etc. there is a tool called drhip we have for ex produces nice tabular summaries for a bolus of hyphy Json might be helpful to you here.

Hi! Thanks for reaching out! I looked into DRHIP and it looks like a great module to add to the pipeline. Thanks for bringing it up here. Would love to stay in touch and work on adding shared modules/subworkflows to nf-core