Hi! I am a new contributor and participating in this year's nf-core hackathon. I have been processing SRA-downloaded scRNA-seq data manually and noticed that

fasterq-dump

output can sometimes have 3 files. I see that there is a feature that does automated renaming of fastq files for cellranger but it assumes fastq files always come in pairs. Does nf-core/scrnaseq already handle this? Or is it a known limitation yet to be addressed? I would love to test it and contribute if there are gaps. I have also raised an issue: https://github.com/nf-core/scrnaseq/issues/531 Please share your thoughts.