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nf-core

<https://github.com/nf-core/configs/issues/1020|#1020 Make all configs strict syntax compatible>
Issue created by <https://github.com/nvnieuwk|nvnieuwk>
Hi everyone!
In April a new Nextflow version will release where the new strict syntax will be enabled by default. This means that a lot of configs in this repository will start failing because of incompatible code. <@UEM37TBAR> and I wrote a <https://hackmd.io/XnkM-abbSBqh4s3cA27wKA|blog post> about this to help you in the migration process.
It would be awesome if everyone pinged in this issue could try and update their config files in the repository and properly test them with and without the strict syntax enabled.
All configs that are not updated by the end of March will get a warning added to them to alert the users that this config will start failing soon and will be deprecated.

*Summary of failing configs with their respective authors*

&gt; Note that this is the status in the `master` branch, some have already been updated in PRs

Please check off your config if the fixes have been merged into the `master` branch, that way we have a quick overview of the progress :rocket:
• <https://github.com/nf-core/configs/blob/master/conf/alliance_canada.config|conf/alliance_canada.config> | Jerry Li (<https://github.com/jerryakii|@jerryakii>)
• <https://github.com/nf-core/configs/blob/master/conf/bi.config|conf/bi.config> | Alexander Peltzer (<@UE4K7EZ4G>)
• <https://github.com/nf-core/configs/blob/master/conf/bigpurple.config|conf/bigpurple.config> | Tobias Schraink (<https://github.com/tobsecret|@tobsecret>)
• <https://github.com/nf-core/configs/blob/master/conf/bih.config|conf/bih.config> | BIH-HPC IT Team <mailto:hpc-helpdesk@bih-charite.de|hpc-helpdesk@bih-charite.de> (<https://github.com/sellth|@sellth>)|
• <https://github.com/nf-core/configs/blob/master/conf/binac.config|conf/binac.config> | Felix Bartusch (<https://github.com/fbartusch|@fbartusch>)
• <https://github.com/nf-core/configs/blob/master/conf/binac2.config|conf/binac2.config> | Felix Bartusch (<https://github.com/fbartusch|@fbartusch>)
• <https://github.com/nf-core/configs/blob/master/conf/biowulf.config|conf/biowulf.config> | <mailto:staff@hpc.nih.gov|staff@hpc.nih.gov> (<https://github.com/qiyubio|@qiyubio>)
• <https://github.com/nf-core/configs/blob/master/conf/bluebear.config|conf/bluebear.config> | Alex Lyttle (<https://github.com/alexlyttle|@alexlyttle>)
• <https://github.com/nf-core/configs/blob/master/conf/cannon.config|conf/cannon.config> | Lei Ma (<https://github.com/microlei|@microlei>)
• <https://github.com/nf-core/configs/blob/master/conf/ceci_dragon2.config|conf/ceci_dragon2.config> | Martin Grignard (<https://github.com/MartinGrignard|@MartinGrignard>)
• <https://github.com/nf-core/configs/blob/master/conf/ceci_nic5.config|conf/ceci_nic5.config> | Martin Grignard (<https://github.com/MartinGrignard|@MartinGrignard>)
• <https://github.com/nf-core/configs/blob/master/conf/ceres.config|conf/ceres.config> | Thomas A. Christensen II (<https://github.com/MillironX|@MillironX>)
• <https://github.com/nf-core/configs/blob/master/conf/cfc.config|conf/cfc.config> | Sabrina Krakau (<https://github.com/skrakau|@skrakau>)
• <https://github.com/nf-core/configs/blob/master/conf/cfc_dev.config|conf/cfc_dev.config> | Sabrina Krakau (<https://github.com/skrakau|@skrakau>)
• <https://github.com/nf-core/configs/blob/master/conf/cheaha.config|conf/cheaha.config> | Lara Ianov (<https://github.com/lianov|@lianov>) or Austyn Trull (<https://github.com/atrull314|@atrull314>)
• <https://github.com/nf-core/configs/blob/master/conf/daisybio.config|conf/daisybio.config> | Johannes Kersting (<https://github.com/JohannesKersting|@JohannesKersting>)
• <https://github.com/nf-core/configs/blob/master/conf/dirac.config|conf/dirac.config> | Vincent Aaskov (<https://github.com/VincentAaskov|@VincentAaskov> )
• <https://github.com/nf-core/configs/blob/master/conf/einstein.config|conf/einstein.config> | Ashot Margaryan (<https://github.com/ashotmarg|@ashotmarg>)
• <https://github.com/nf-core/configs/blob/master/conf/embl_hd.config|conf/embl_hd.config> | <https://github.com/fullama|@fullama>
• <https://github.com/nf-core/configs/blob/master/conf/fub_curta.config|conf/fub_curta.config> | Wassim Salam (<https://github.com/wassimsalam01|@wassimsalam01>)
• <https://github.com/nf-core/configs/blob/master/conf/imb.config|conf/imb.config> | Patrick Hüther (<https://github.com/phue|@phue>)
• <https://github.com/nf-core/configs/blob/master/conf/imperial.config|conf/imperial.config> | Nurun Fancy (<https://github.com/nfancy|@nfancy>)
• <https://github.com/nf-core/configs/blob/master/conf/incliva.config|conf/incliva.config> | Sheila Zúñiga Trejos (@nevinwu)
• <https://github.com/nf-core/configs/blob/master/conf/iris.config|conf/iris.config> | Nikhil Kumar (<https://github.com/nikhil|@nikhil>)
• <https://github.com/nf-core/configs/blob/master/conf/kaust.config|conf/kaust.config> | Husen Umer (<https://github.com/husensofteng|@husensofteng> )
• <https://github.com/nf-core/configs/blob/master/conf/lovelace.config|conf/lovelace.config> | Ashot Margaryan (<https://github.com/ashotmarg|@ashotmarg>), Vincent Aaskov (<https://github.com/VincentAaskov|@VincentAaskov>)
• <https://github.com/nf-core/configs/blob/master/conf/m3c.config|conf/m3c.config> | Sabrina Krakau (<https://github.com/skrakau|@skrakau>)
• <https://github.com/nf-core/configs/blob/master/conf/mana.config|conf/mana.config> | Cedric Arisdakessian (<https://github.com/Puumanamana|@Puumanamana>)
• <https://github.com/nf-core/configs/blob/master/conf/marjorie.config|conf/marjorie.config> | Ashot Margaryan (<https://github.com/ashotmarg|@ashotmarg>), Vincent Aaskov (<https://github.com/VincentAaskov|@VincentAaskov>)
• <https://github.com/nf-core/configs/blob/master/conf/nci_gadi.config|conf/nci_gadi.config> | Georgie Samaha (<https://github.com/georgiesamaha|@georgiesamaha>), Matthew Downton (<https://github.com/mattdton|@mattdton>)
• <https://github.com/nf-core/configs/blob/master/conf/nygc.config|conf/nygc.config> | John Zinno (<https://github.com/jzinno|@jzinno>)
• <https://github.com/nf-core/configs/blob/master/conf/pdc_kth.config|conf/pdc_kth.config> | Pontus Freyhult (<https://github.com/pontus|@pontus>)
• <https://github.com/nf-core/configs/blob/master/conf/pe2.config|conf/pe2.config> | John Zinno (<https://github.com/jzinno|@jzinno>)
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/deepmodeloptim/crg.config|conf/pipeline/deepmodeloptim/crg.config> | Luisa Santus (<https://github.com/luisas|@luisas>)
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/eager/eva.config|conf/pipeline/eager/eva.config> | James Fellows Yates (<@UEM37TBAR>)
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/eager/maestro.config|conf/pipeline/eager/maestro.config> | <https://github.com/pierrespc|@pierrespc>
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/multiplesequencealign/crg.config|conf/pipeline/multiplesequencealign/crg.config> | Luisa Santus (<https://github.com/luisas|@luisas>)
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/proteinfold/nci_gadi.config|conf/pipeline/proteinfold/nci_gadi.config> | Mitchell O\Brien (<https://github.com/Mitchob|@Mitchob>)
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/sarek/cfc.config|conf/pipeline/sarek/cfc.config> | Friederike Hanssen (<https://github.com/FriederikeHanssen|@FriederikeHanssen>) <https://github.com/famosab|@famosab>
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/sarek/icr_davros.config|conf/pipeline/sarek/icr_davros.config> | <https://github.com/adrlar|@adrlar>
• <https://github.com/nf-core/configs/blob/master/conf/pipeline/scflow/imperial.config|conf/pipeline/scflow/imperial.config> | <https://github.com/combiz|@combiz>
• <https://github.com/nf-core/configs/blob/master/conf/qmul_apocrita.config|conf/qmul_apocrita.config> | Simon Murray (<https://github.com/just-simon-5|@just-simon-5>) &amp; <https://github.com/chriswyatt1|@chriswyatt1>
• <https://github.com/nf-core/configs/blob/master/conf/sage.config|conf/sage.config> | Brun…
<https://github.com/nf-core/configs|nf-core/configs>

<https://github.com/nf-core/configs/issues/1020|#1020 Make all configs strict syntax compatible>
Issue closed as completed by <https://github.com/microlei|microlei>
<https://github.com/nf-core/configs|nf-core/configs>

<https://github.com/nf-core/configs/issues/1020|#1020 Make all configs strict syntax compatible>
Issue reopened by <https://github.com/apeltzer|apeltzer>
<https://github.com/nf-core/configs|nf-core/configs>