I'm planning to migrate this local sub-workflow fr...
# magm
Martin Beracochea
03/11/2026, 1:24 PMI'm planning to migrate this local sub-workflow from MAG https://github.com/nf-core/mag/blob/main/subworkflows/local/catpack/main.nf, because I want to use it in seqsubmit. Any objections?
d
Diego Alvarez Saravia
03/11/2026, 1:42 PMYou mean making it a nf-core subworkflow?
That would be great! Once you’ve finished it, we’d be happy to accept a PR to make the change for mag.
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Martin Beracochea
03/11/2026, 1:42 PMyup.. brilliant. Will send you the PR then
j
James Fellows Yates
03/11/2026, 3:03 PM♥️♥️♥️♥️
m
Martin Beracochea
03/11/2026, 3:59 PMDraft PR - https://github.com/nf-core/modules/pull/10549 ... I'm not too sure about the db/download handling bits (I'll revisit tomorrow). But, if anyone ones to give this one a read ... please go ahead
j
Jim Downie
03/12/2026, 10:08 AMI have left some thoughts!
thankyou 1
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Martin Beracochea
03/12/2026, 2:27 PMPR ready for a round of review https://github.com/nf-core/modules/pull/10549 @Jim Downie @Diego Alvarez Saravia @Evangelos Karatzas thanks for the feedback!