A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Some updates :dizzy:

• Assembly flow was done by <@U08AHEKTQQ4> 
• I will work on genome flow today: add/combine <https://github.com/nf-core/seqsubmit/issues/10|RNA>, <https://github.com/nf-core/seqsubmit/issues/9|coverage> and <https://github.com/nf-core/seqsubmit/issues/7|quality> and maybe taxonomy
• We have also started adding <https://github.com/nf-core/seqsubmit/issues/28|raw-reads submission workflow> 

Can you add some _things_ here please - <https://docs.google.com/presentation/d/1_RIsnSI6l5B3zdmHdhIlZExSU9T7K1LOYXSD9RYbeU0/edit?slide=id.g3cef424bc74_20_5#slide=id.g3cef424bc74_20_5>

Please <@U08CQLYREPL> add your progress to this slide too

Progress is still in various repos modifying Python scripts. I'll stitch them together in the seqsubmit repo tomorrow. I've got submitting samples and runs / experiments working (the latter is based on webin-cli wrapper in mgnify-pipelines-toolkit)

I'm enjoying the image you put on the seqsubmit slide. I can't argue