Andres Florian
03/08/2026, 8:35 PMstacks/refmap module for the Stacks RAD-seq pipeline (ref_map.pl). The module needs BAM files + a population map as test data, and there's currently no RAD-seq BAM data in the modules branch of nf-core/test-datasets.
The radseq branch already has the source FASTQs (Lpolyphemus ddRAD chr26 data, msp_0 to msp_9), and I've aligned these to the reference to produce small BAM files (~8KB each, 10 files total) plus a popmap.tsv.
I'd like to add these to the modules branch under data/genomics/eukaryotes/lpolyphemus/radseq/. Is this the right approach, or is there a preferred location/convention I should follow? Happy to adjust as needed. Thanks!Andres Florian
03/09/2026, 2:22 PMAndres Florian
03/09/2026, 4:12 PM