Here is a PR for a new subworkflow to call variant...
# request-reviewl
Louis Le Nézet
02/27/2026, 5:29 PMHere is a PR for a new subworkflow to call variant.
It does also update some bcftools modules but I have some trouble with the intervals file with mpileup.
Can anyone take look ?
https://github.com/nf-core/modules/pull/10283
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Louis Le Nézet
03/02/2026, 11:18 AM@Maxime Garcia, @Simon Pearce or @Jonathan Manning could you take a look at this PR and tell me what you think ?
Louis Le Nézet
03/02/2026, 1:33 PMThanks for the fix @Jonathan Manning
blob np 1
Louis Le Nézet
03/02/2026, 2:34 PMCould I have a review ?
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Maxime Garcia
03/02/2026, 2:43 PMwhich PR?
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Louis Le Nézet
03/02/2026, 2:44 PMThe one above ?
https://github.com/nf-core/modules/pull/10283
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Maxime Garcia
03/02/2026, 2:44 PMthere was another text that got removed
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Louis Le Nézet
03/02/2026, 2:49 PMSorry, it was a mistake ^
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Maxime Garcia
03/02/2026, 2:50 PMNo worries
Maxime Garcia
03/02/2026, 2:50 PMI made some suggestions
Maxime Garcia
03/02/2026, 2:50 PMlooking good
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