Hi everyone! Could those of you experienced with making test datasets for nf-core pipelines have a look at my test dataset for cageseq v2? The structure of the test data folder now looks like this:

├── LICENSE
├── README.md
├── docs
│   ├── ADD_NEW_DATA.md
│   ├── USE_EXISTING_DATA.md
│   └── images
│       ├── test-datasets_logo.png
│       └── test-datasets_logo.svg
├── reference
│   ├── BSgenome.sacCer3ChrIII.Sidorov.sacCer3ChrIII_1.0.tar.gz
│   ├── sacCer3chrIII.fa
│   ├── sacCer3chrIII.gtf
│   └── v1
│       ├── chr_sub.fasta
│       └── chr_sub.gtf
├── samplesheet
│   ├── samplesheet.csv
│   └── v1
│       └── samplesheet.csv
└── testdata
    ├── S1_chrIII_unique.fastq.gz
    ├── S2_chrIII_unique.fastq.gz
    └── v1
        ├── cage1.fastq.gz
        └── cage2.fastq.gz

Here, in v1, I put files that were used for the first version of the pipeline, because the second version of the pipeline did not work on them for some cryptic reasons, and because I created and tested much smaller files for v2 anyway. New FASTQ sizes:

152K    testdata/S1_chrIII_unique.fastq.gz
136K    testdata/S2_chrIII_unique.fastq.gz

Sizes of new reference files:

84K     reference/BSgenome.sacCer3ChrIII.Sidorov.sacCer3ChrIII_1.0.tar.gz
320K    reference/sacCer3chrIII.fa
152K    reference/sacCer3chrIII.gtf

Sizes of old FASTQ files:

2.2M    cage1.fastq.gz
2.2M    cage2.fastq.gz

Sizes of old reference files:

17M     chr_sub.fasta
196K    chr_sub.gtf

Please let me know if I need to change anything before I open a pull request into

test-datasets

.

I would put everything into a v2 subfolder where it is different to v1.

Thank you very much, Matthias! I'll do.