Hi! My apologies if this has been asked before (I could not find it), is it possible to know by looking into the somatic vcf files which variants are added in the Orange report? Which INFO fields does orange use? Thanks again in advance! 🙏

Hi Eva, there's a trail from what's in the Driver Gene Panel and what is outputted by ORANGE https://github.com/hartwigmedical/hmftools/blob/master/purple/DriverCatalog.md - for unadjusted and unfiltered variant calls, you can look into the SAGE output - hope this helps

Thank you so much! I saw that the variants themselves are marked in the purple vcf file too with :

##INFO=<ID=REPORTED,Number=0,Type=Flag,Description="Variant is reported in the driver catalog">