All remaining PICARD modules got their topics conv...
# request-reviewm
Maxime Garcia
02/19/2026, 6:03 PMAll remaining PICARD modules got their topics conversion: https://github.com/nf-core/modules/pull/10114
big red rubber duck 1
Maxime Garcia
02/19/2026, 7:03 PMFlagging this one for you @Jonathan Manning as I made what I would called an improvement on PICARD_MARKDUPLICATES:
I changed the output from the metrics file that contained the hardcoded string
MarkDuplicates${prefix}.MarkDuplicates.metrics.txt${prefix}.metrics.txtMaxime Garcia
02/19/2026, 7:04 PMNoticed in rnavar that I was getting file.md.MarkDuplicates.metrics.txt 😆
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Jonathan Manning
02/19/2026, 9:10 PMThat's a big'un! I'll look tomorrow
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Maxime Garcia
02/19/2026, 10:28 PMYeah, sorry
Maxime Garcia
02/19/2026, 10:33 PMMost of the PR is just version topic migration
Maxime Garcia
02/19/2026, 10:33 PMI really just wanted to warn you for markduplicates
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