I think this is due to the freyja module using

--meta

when it should be using (or updated to use)

--lineageyml

. This bug documents the issue; https://github.com/andersen-lab/Freyja/issues/278

Ooh sweet an issue and a fix have already been implemented. Let me patch the modules

Thanks Joon, I was going to do it but wasn't sure if this was the actual issue because I've not used Freyja before

The best type of bug