Hello! I am rerunning the release megatests at the moment to make sure all pipelines have it displayed. The

test_full

profile fails for me with:

.command.sh: line 3: /usr/local/bin/samtools: Argument list too long

Could someone take a look please? https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/1BObgMVfLfxc4t/v2/logs

Hi @Rike Hanssen, apologies for the delay I did not receive this Slack notification for some reason (I think @Austyn Trull did not either), so we will need to check what is going on. But to your question here - is this an issue you are getting only when running it in cloud.seqera? (your link is not getting me anywhere / I cannot see the log)

I can confirm the error occurred on ny end as well when trying to test a PR a couple days ago, Im looking into it and will update when I have a fix!

@Rike Hanssen: just a quick fyi that the fix is now in the latest version (no need to review). So if you have any issues let us know. We are in the hackathon, so would be a good time to address any problems here.