Hello! I am regenerating some of the aws megatest results at the moment. Bacass 2.5.0 fails for me with

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  Assembly type not provided.
  Please specify the '--assembly_type' parameter to perform the assembly.
  Accepted: short, long, hybrid.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/4JxnUjPL5BOSxa/v2/logs

(I couldn’t access the nf-core organization. The error I’m getting is:

Organization with name "nf-core" not found

) This might be related to the fact that the

assembly_type

parameter needs to be explicitly specified in the

nextflow run

command.

ok let me add you. Could you define this in the test_full config in the future please? That profile should run without any further adjustments needed by the user.

Sure, thanks 👍 I’ll create an issue to make sure this is properly defined in the

test_full

.

What value can I set to get the test full to pass?

I’m running a few tests right now to check this properly. At the moment I’m hitting a connection timeout on one of the SRA samples (SRR10093029_2.fastq.gz)... I will re-run it and confirm the setup for test_full