Hi, I'm having problem with matching the snapshots where I created locally to the one ran in CI on github. These files were not created when I ran nf-test locally, but appeared in the CI run:

"multiqc/multiqc_plots/pdf/samtools-flagstat-pct-table.pdf", 
"multiqc/multiqc_plots/pdf/samtools-flagstat-table.pdf", 
"multiqc/multiqc_plots/png/samtools-flagstat-pct-table.png", 
"multiqc/multiqc_plots/png/samtools-flagstat-table.png" 
"multiqc/multiqc_plots/svg/samtools-flagstat-pct-table.svg" 
"multiqc/multiqc_plots/svg/samtools-flagstat-table.svg"

My command used for creating the snapshot:

nf-test test tests/default.nf.test --profile=+singularity --update-snapshot

and here is the run that failed. I wanted to try updating the snapshot in codespace but got this error

This codespace is currently running in recovery mode due to a configuration error.

. Any idea why this happened? 😞

do you have this line in your

.nftignore

?

i have this

try the pattern with wildcard to allow all intermediate subdirs

multiqc/*/multiqc_plots/{pdf,png,svg}/*.{pdf,png,svg}

Not created locally? Which MultiQC version are you using? Which OS?

@Sateesh_Peri i tried with your suggestion, but it still gave the same failing error, these files were not created in my local test snapshot

there is a newer version of multiqc

I would try 1.33 as 1.32 had some issue with some pictures

i tried your suggestion, but still ran into the same conflict

try codespaces again plz....cant help if we can't reproduce it

i tried to set up codespace but ran into this error:

This codespace is currently running in recovery mode due to a container error.
1. Use Cmd/Ctrl + Shift + P -> "Codespaces: View Creation Log" to see full logs
2. Update your devcontainer configuration as needed
3. Use Cmd/Ctrl + Shift + P -> "Codespaces: Rebuild Container" to retry
4. For help, read more about custom configuration: <https://aka.ms/ghcs-custom-configuration>
mkdir: cannot create directory '/root': Permission denied
codespaces-1f192b:/workspaces/methylong$ touch: cannot touch '/root/.config/vscode-dev-containers/first-run-notice-already-displayed': Permission denied

I am also getting the same error with codespaces

as in, for the setting up of codespace?

yes

hmm.. im not really sure how to proceed from here..

a full rebuild of the codespace worked for me

thanks @Sateesh_Peri, I managed to full rebuild too after making

/workspaces/methylong/.devcontainer/setup.sh

executable :))