Hello, I am failing to run mag dev branch tests. Is this a correct minimal script?

cd ~/mag-dev/mag

git checkout dev
git pull

# Run test
nf-test test \
  --profile debug,test,apptainer \
  --verbose

I am guessing these errors are because of missing files

grep 'error' nfcore-mag_12161.out 
    >             error("Could not find any FASTQ files to concatenate in the process input")
    >             error("Could not find any FASTQ file pairs to concatenate in the process input")
    >     if (reads && abund) { error("ERROR: MaxBin2 can only accept one of `reads` or `abund`, no both. Check input.") }
    >     if (reads && abund) { error("ERROR: MaxBin2 can only accept one of `reads` or `abund`, no both. Check input.") }
    >     if (reads && abund) { error("ERROR: MaxBin2 can only accept one of `reads` or `abund`, no both. Check input.") }
    >     if (reads && abund) { error("ERROR: MaxBin2 can only accept one of `reads` or `abund`, no both. Check input.") }
    > [7d/83c89d] NOTE: Process `NFCORE_MAG:MAG:BINNING:MAXBIN2 (test_minigut_sample2)` terminated with an error exit status (255) -- Error is ignored
    >         error("Mode must be one of 'genome', 'proteins', or 'transcriptome'.")
    >         error("Mode must be one of 'genome', 'proteins', or 'transcriptome'.")
    >         error("Mode must be one of 'genome', 'proteins', or 'transcriptome'.")
.
.
.
.

In general, how do you go about testing? Do i need nf-core/test-datasets? Do i need to change

params {
    modules_testdata_base_path = '<https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/>'
    pipelines_testdata_base_path = '<https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/mag>'
}

in

mag/tests/nextflow.config

? Apologies, so many different errors knot my brain.

No I think the

nf-test

command you want, for example for

test_single_end.conf

is:

nf-test test --tag test_single_end --profile +docker --update-snapshot

For example

Worked, perfect. Thank you