scdownstream team, planning to adopt this nextflow pipeline, any good use cases would be very helpful
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Nico Trummer
12/17/2025, 7:22 PM
Hey, just to understand - you want to use this pipeline and are not sure what it is useful for?
Or are you more looking for a demo configuration that you can use to see what the inputs and outputs look like?
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Mohammed Kanchwala
12/17/2025, 7:33 PM
I want to see a successful story where this pipeline was used and results published if its exists. Does not have to be peer reviewed publication, even a blog post or internal results work.
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Nico Trummer
12/21/2025, 6:08 PM
Well I am working on a publication + use case of the pipeline, also there were some atlases built with it, but nothing publicly available yet unfortunately