A new request to upload a dataset to nf-core AWS S3 bucket has been made! • Requested by: @Niklas Schandry • Pipeline name: genomeassembler • Why is this needed?: This is genomic short read data, to test short-read dependent functions of genomeassembler. This data corresponds to the same plant accession as the long-reads already uploaded, albeit from a different individual. This is public data (https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&page_size=10&acc=SRR1604937) mirrored by me for transfer. • Size of the dataset: 3GB (2 x 1.53 GB) • URL: https://g-f6c2d9.0beca.5898.data.globus.org/genomeassembler_test_data/SRR1604937_1.fastq.gz https://g-f6c2d9.0beca.5898.data.globus.org/genomeassembler_test_data/SRR1604937_2.fastq.gz • Related files: Core team will add this dataset to the nf-core bucket. Please react to the message with ✅ when this is done. [This process is not automated]

@Niklas Schandry trying to upload the files now. Just to double check, they should be inside the

A_thaliana_Col-0_2mb/

directory or should i make a new one named

SRR1604937/

?

Doesn't really matter to me, but they are the full genome not 2mb which i use for the small tests

we mirror everything there

Probably better

ah, okay, will talk with him then

done

<s3://nf-core-awsmegatests/genomeassembler/input/SRR1604937_1.fastq.gz>

and the same for the second file

Thanks!