Hi! I am trying to run the test dataset to see if ...
# help
s
Hi! I am trying to run the test dataset to see if the rnaseq pipeline works. However, I get this error message. Any hint on how to solve this? Thank you
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-[nf-core/rnaseq] Pipeline completed with errors-
ERROR ~ Error executing process > 'NFCORE_RNASEQ:RNASEQ:FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC (1)'

Caused by:
  Failed to pull singularity image
    command: singularity pull  --name depot.galaxyproject.org-singularity-fastqc-0.12.1--hdfd78af_0.img.pulling.1765270673200 <https://depot.galaxyproject.org/singularity/fastqc:0.12.1--hdfd78af_0> > /dev/null
    status : 143
    hint   : Try and increase singularity.pullTimeout in the config (current is "20m")
    message:
      INFO:    Downloading network image
e
Try this command manually:
singularity pull  --name depot.galaxyproject.org-singularity-fastqc-0.12.1--hdfd78af_0.img.pulling.1765270673200 <https://depot.galaxyproject.org/singularity/fastqc:0.12.1--hdfd78af_0>
Make sure you have
singularity
installed on your machine
And then rerun the pipeline