I found a couple of issues with the annota2seq module while working up for deltate, would someone care to review for me? https://github.com/nf-core/modules/pull/9510

I can review. But we need to communicate responsibilities better, otherwise we run the risk of working on the same problems: • https://github.com/nf-core/modules/pull/9508 • https://github.com/nf-core/modules/pull/9511

sorry, I didn't even know anyone else was working on these pieces

Thanks!

Yep, just spotted some missing pieces

I have closed 9508, because your 9510 is more comprehensive. However, can you either merge 9511 into your 9510 (or into master directly)?

I'll merge 9511 and add you as a coauthor on 9510

Thanks!

sure, I'll take a look

Thanks. The kind of feedback I needed!

It's very new. I won't insist if you want to do the old-school thing, but fwiw: https://nf-co.re/blog/2025/version_topics I'm happy to handle the pipeline side

Thanks! Unfortunately, this wasn't really helpful, though. It looks wrong, too: On this page it reads:

- "{{ component }} --version":

type: *eval*

description: The expression to obtain the version of the tool

Which makes sense to me. On your linked page it reads:

- fastqc --version | sed "/FastQC v/!d; s/.*v//:

type: *string*

description: The command used to generate the version of the tool

Which doesn't make sense to me, because I would intuitively think that the command must be `eval`uated. Also, the

sed

command lacks a closing

"

, which I can hardly image is correct. And I am supposed to wrap all of this in quotes as in example 1 or not? I find both versions in different places. Without a working example, I can only guess what is correct, or fiddle around with the code for a couple of hours until I get it right.

Just do the old school way, we'll figure this out later