New release is out 🎄: https://github.com/nf-core/rnavar/releases/tag/1.2.2 Important: • Fixing an issue with known_indels and dbsnp params that were badly passed to GATK BaseRecalibrator 🧰 Lots of tools were updated • bcftools from

1.21

to

1.22

• ensembl-vep from

115.1

to

115.2

• gatk4 from

4.6.1.0

to

4.6.2.0

• htslib from

1.21

to

1.22.1

• multiqc from

1.30

to

1.31

• picard from

3.3.0

to

3.4.0

• samtools from

1.21

to

1.22.1

• snpeff from

5.1d

to

5.3.0a

• umi_tools from

1.1.5

to

1.1.6

alert SNPEFF alert snpeff default cache version is now 99 since the change of storage this summer. Please check the documentation for more info on how to set it up 📚 https://nf-co.re/rnavar/dev/docs/usage/#what-happened-with-snpeff-db-105 cattyping From the developers front: Pipeline now use TEMPLATE from the nf-core/tools v3.5.1 Nextflow plugins have been updated: • nf-core-schema from

2.4.2

to

2.6.1

• nf-core-utils was added with

0.4.0

Minimal Nextflow version is now

25.10.2

, and we're working on converting the pipeline to the coming strict syntax and all the Nextflow new features 🚀