<#C07NY6CGWPP|> PR ready: <https://github.com/nf-c...
# wg-container-conversion-task-forcee
Evangelos Karatzas
12/04/2025, 10:02 AM#C07NY6CGWPP PR ready: https://github.com/nf-core/drugresponseeval/pull/67/files
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mashehu
12/04/2025, 10:05 AM@JĂșlia Mir can you have a look? you have the most experience in how things should look like
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Evangelos Karatzas
12/04/2025, 10:10 AMUntil the pipeline conforms to the nf-core rules about containerization per-module, I've left a pipeline-wide container / env, as it currently is in the pipeline (other than the unzip modules)
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JĂșlia Mir
12/04/2025, 10:27 AMas a first comment, the module name sin the config files will only contain the module name, not the whole path. I think it would be better to start testing it like this already so see if we find any problems
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Evangelos Karatzas
12/04/2025, 10:27 AMok!
Evangelos Karatzas
12/04/2025, 10:28 AMSo I guess instead of writing all three variations of the same module, it should be enough to write just
UNZIPj
JĂșlia Mir
12/04/2025, 10:28 AMyes!
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Evangelos Karatzas
12/04/2025, 10:29 AMeven better
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JĂșlia Mir
12/04/2025, 10:29 AMyou could dubplecheck with
nextflow inspect -format configUNZIPe
Evangelos Karatzas
12/04/2025, 10:30 AMnice command, didnt know that đ yep, only once
Evangelos Karatzas
12/04/2025, 12:44 PMIn the end I made the swap to the nf-core
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