Yes, the pipeline finished successfully :partying_...
# cageseq
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Yes, the pipeline finished successfully 🥳 thanks for the quick debugging
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[1e/54234d] process > CUSTOMCAGE:PREPROCESSING:CAT_FASTQ (S1_S1)                      [100%] 2 of 2 ✔
[8e/90414a] process > CUSTOMCAGE:PREPROCESSING:FASTQC (S1_S1)                         [100%] 2 of 2 ✔
[b3/38e422] process > CUSTOMCAGE:PREPROCESSING:TRIMGALORE (S1_S1)                     [100%] 2 of 2 ✔
[52/bda9ad] process > CUSTOMCAGE:PREPROCESSING:CUTADAPT (S1_S1)                       [100%] 2 of 2 ✔
[03/dcfde1] process > CUSTOMCAGE:PREPARE_MAPPING_METADATA:SAMTOOLS_FAIDX (sacCer3.fa) [100%] 1 of 1 ✔
[5c/b06cc1] process > CUSTOMCAGE:BOWTIE2:BOWTIE2_ALIGN (S1_S1)                        [100%] 2 of 2 ✔
[78/a32bba] process > CUSTOMCAGE:BOWTIE2:SAMTOOLS_VIEW_MAPQ (S2_S2)                   [100%] 2 of 2 ✔
[83/374b7b] process > CUSTOMCAGE:SAMTOOLS_PROCESSING:SAMTOOLS_SORT (S2_S2)            [100%] 2 of 2 ✔
[35/3938ab] process > CUSTOMCAGE:SAMTOOLS_PROCESSING:SAMTOOLS_INDEX (S2_S2)           [100%] 2 of 2 ✔
[a0/a22549] process > CUSTOMCAGE:SAMTOOLS_STATISTICS:SAMTOOLS_STATS (S1_S1)           [100%] 2 of 2 ✔
[0f/70d799] process > CUSTOMCAGE:SAMTOOLS_STATISTICS:SAMTOOLS_FLAGSTAT (S1_S1)        [100%] 2 of 2 ✔
[c1/523bf7] process > CUSTOMCAGE:SAMTOOLS_STATISTICS:SAMTOOLS_IDXSTATS (S2_S2)        [100%] 2 of 2 ✔
[40/59179f] process > CUSTOMCAGE:WRITE_SAMPLE_LIST (2)                                [100%] 2 of 2 ✔
[83/130314] process > CUSTOMCAGE:PREPARE_CAGER_METADATA:GTF2TXDB (1)                  [100%] 1 of 1 ✔
[e4/f47d32] process > CUSTOMCAGE:CAGER:CAGER_READIN (1)                               [100%] 1 of 1 ✔
[4e/5b438a] process > CUSTOMCAGE:CAGER:CAGER_TAG_QC (1)                               [100%] 1 of 1 ✔
[a9/04d69f] process > CUSTOMCAGE:CAGER:CAGER_PROCESSING (1)                           [100%] 1 of 1 ✔
[d1/b60c1f] process > CUSTOMCAGE:CAGER:CAGER_TAGCLUSTER_QC (1)                        [100%] 1 of 1 ✔
[c2/20cfa4] process > CUSTOMCAGE:CAGER:CAGEFIGHTR_ENHANCER_CALLING (1)                [100%] 1 of 1 ✔
[21/b158da] process > CUSTOMCAGE:CAGER:CAGER_REPORT (1)                               [100%] 1 of 1 ✔
[24/0e222a] process > CUSTOMCAGE:MULTIQC                                              [100%] 1 of 1 ✔
-[ComputationalRegulatoryGenomicsICL/customcage] Pipeline completed successfully-
Completed at: 03-Dec-2025 11:39:46
Duration    : 6m 46s
CPU hours   : 0.4
Succeeded   : 33