```nextflow run nf core createpanelrefs r dev profile singul nf-core #createpanelrefs

```nextflow run nf-core/createpanelrefs -r dev -p...

pelonn

12/02/2025, 2:23 PM

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nextflow run nf-core/createpanelrefs -r dev  -profile singularity --input createpanelrefs_SLPD001_samplesheet.csv --tools germlinecnvcaller --genome GATK.GRCh38 --igenomes_base /data/ref/igenomes/ --outdir createpanelrefs_SLPD001_out

With igenomes data downloaded fro aws as this:

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