A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi there! I try to add some linting instructions to `.nf-core.yml` to ignore them for the subworkflow warnings I get like `main_nf_include_used` `meta_yml_exists` in my custom pipeline but they dont get applied and I still get the warnings when linting. Any ideas how to fix this?

I use:
```lint:
  local_component_structure: false
  main_nf_include_used: false
  meta_yml_exists: false```
`local_component_structure` gets applied but the others dont