First: Thanks for providing some great pipelines ! I have been running nf-core/mag 5.2.0 in offline mode using 4 ONT reds from http://www.inbirg.com/hlrmdb/ as a test. nextflow run nf-core/mag --input samplesheet.csv --outdir mag_out -profile I encounter an error in the NFCORE_MAG🔍BINNINGBINNING METABINNERMETABINNER_BINS step. I have attached the log (out.tx), the sample sheet and the command that fails. The problem is that there are no files matching find ./bins/ -name "*[tooShort,unbinned].fa.gz" -type f -exec mv {} . \; Seems like a bug ? Can you advise on how I should proceed ?

Thanks for the report, yes, that seems like a bug. And I think it was reported earlier in https://github.com/nf-core/mag/issues/926 and solved in the dev branch (i.e. not in a release yet). You could skip metabinner with

--skip_metabinner

and resume the pipeline (add

-resume

) for now. Sorry for the trouble.

Brilliant. Thanks for the very quick reply!

@Diego Alvarez Saravia I think we should release 5.3.0 😅 this keeps ocming up

Let me check the tiara thing first

OK no worries if you already had a plan

And also add the fix for busco

I think I've already closed 2 issues related to similar things already in the last week

Yep, I'm gonna try to tackle both issues today so we can start tagging the release