Hi! I'm trying to run funcscan for a contig fasta file and am getting error messages. I've put just one sequence in my .csv sample file. I understand that the contigs on the sample file are repetitions from the same sample, but I only have one contig per sample. How could I run my sequence? #CE6SDBX2A

Hi @Nathalia Fernandes we need to see some of the error messages first

To help we'd love a few more details please: 1. The Nextflow command you used to launch the pipeline 2. Any custom Nextflow config files 3. The full error message 4. The corresponding

.nextflow.log

file, where you are running the analysis. Remember to use triple backslashes on their own lines for code blocks. Also take a look at https://nf-co.re/usage/troubleshooting for more information on debugging failed pipelines. Thanks!

1. Nextflow command nextflow run nf-core/funcscan --input sample.csv --outdir ./results/ -profile conda --run_amp_screening 2. I'm not using any config files 3. Error is attached to this message 4. I don't know where I should be looking for the .nextflow.log Appreciate the help 🙂

For future reference

.nextflow.log

is a hidden file that will be present wherever you you ran the

nextflow run

command (you can see it e.g. if you run

ls -h