Kata Ferenc
11/24/2025, 8:48 AMExecution cancelled -- Finishing pending tasks before exit
WARN: Got an interrupted exception while taking agent result | java.lang.InterruptedException
ERROR ~ Execution aborted due to an unexpected error
-- Check script 'customcageq/modules/nf-core/samtools/faidx/main.nf' at line: 6 or see '.nextflow.log' file for more details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: <https://nf-co.re/docs/usage/troubleshooting>
-- Check '.nextflow.log' file for details
ERROR ~ Unexpected error [ClosedByInterruptException]
-- Check '.nextflow.log' file for details
ERROR ~ Unexpected error [ClosedByInterruptException]
-- Check '.nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: <https://nf-co.re/docs/usage/troubleshooting>
-- Check '.nextflow.log' file for details
-[ComputationalRegulatoryGenomicsICL/customcage] Pipeline completed with errors-
in nextflow.log
Nov-21 09:14:06.051 [Actor Thread 164] ERROR nextflow.processor.TaskProcessor - Execution aborted due to an unexpected error
java.lang.NullPointerException: Cannot get property 'containerEngine' on null object
at org.codehaus.groovy.runtime.NullObject.getProperty(NullObject.java:92)
at org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
at Script_3d42c4742b2bee98$_runScript_closure1$_closure6.doCall(Script_3d42c4742b2bee98:6)
at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
at java.base/java.lang.reflect.Method.invoke(Method.java:580)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)
at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:280)
at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)
at groovy.lang.Closure.call(Closure.java:433)
at groovy.lang.Closure.call(Closure.java:412)
at org.codehaus.groovy.runtime.GStringUtil.writeToImpl(GStringUtil.java:89)
at org.codehaus.groovy.runtime.GStringImpl.writeTo(GStringImpl.java:96)
at groovy.lang.GString.toString(GString.java:121)
at org.codehaus.groovy.runtime.GStringImpl.toString(GStringImpl.java:349)
at nextflow.processor.LazyMap.resolveImpl(TaskConfig.groovy:707)
at nextflow.processor.LazyMap.resolveImpl(TaskConfig.groovy)
at nextflow.processor.LazyMap.resolve(TaskConfig.groovy:659)
at nextflow.processor.LazyMap.getValue(TaskConfig.groovy:726)
at nextflow.processor.LazyMap.get(TaskConfig.groovy:721)
at nextflow.processor.TaskConfig.get(TaskConfig.groovy:153)
at nextflow.processor.TaskConfig.getContainer(TaskConfig.groovy:438)
at org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
at nextflow.processor.TaskRun.containerInfo0(TaskRun.groovy:689)
at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
at java.base/java.lang.reflect.Method.invoke(Method.java:580)
at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)
at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)mashehu
11/24/2025, 1:50 PM