Jacob Egemose-Høgfeldt
11/21/2025, 12:59 PMnextflow run nf-core/airrflow -r 4.3.0 \
-profile clontech_umi_bcr,singularity \
--input /faststorage/Heavy_chain.tsv \
-c /faststorage/resources.config \
--outdir /faststorage/AIRRFLOW_results \
-resume
Is the DefineClones report included?
Extra regarding DefineClones / Changeo:
I read this article: https://www.frontiersin.org/journals/immunology/articles/10.3389/fimmu.2022.814239/full that for figure 2E they used Changeo. Is the output from Changeo included in the nf-core/airrflow result if --skip_all_clones_report is set to FALSE?