Hi! I am getting this error when merging the templ...
# nf-test
j
Hi! I am getting this error when merging the template:
Copy code
> -[nf-core/chipseq] Pipeline completed successfully-
java.lang.RuntimeException: Different Snapshot:
--- /tmp/expected3253151944403336540jso +++ /tmp/found13451035613418343500json 
n                                                                              
@@ -1,5 @@                              @@ +1,4 @@                             
    1 [                                     1 [                                
-   2     215,                                                                 
    3     {                                 2     {                            
    4         "ANNOTATE_BOOLEAN_PEAKS":     3         "ANNOTATE_BOOLEAN_PEAKS":
 {                                       {                                     
    5             "sed": 4.7                4             "sed": 4.7           

    FAILED (879.096s)

  Assertion failed: 
  
  1 of 2 assertions failed
see log of the PR test here I tried to reproduce it in local (with docker) and in my hpc (there with apptainer, though the failing test is with docker) and I can not reproduce it, any hints?
s
L2 workflow trace succeeded is not supported anymore I think
j
sorry I dont understand what you mean 😓
@Maxime Garcia why was this not working again ?
m
we noticed an issue with a nextflow version, so we removed that with julia, but unsure if it's actually useful or not
j
actually, the test that is failing is only the default (though all of them have this line) not the bowtie2
m
I need to do a proper matrix test
template update have removed this line
so we don't test size anymore
j
OK, will try to remove it and see whether I am getting the same error
m
or add it back
j
what do you mean?
m
Either add back the workflow.trace.task.successfull.size() to the nf.test as you have in the other tests
or remove the
215,
from the snapshot
j
OK, now I understand
thanks
m
I'll try to find 5 min to run tests and make sure where it's working and where it's failing
Sorry I didn't find time for this before
and if good, I'll put it back in template
🙌🏻 1