I am using the ensembl_vep module and wanted to as...
# modulesl
Lis Arend
11/07/2025, 3:07 PMI am using the ensembl_vep module and wanted to ask how to handle the VEP cache when using Docker/Singularity. In my Nextflow pipeline, I give users the option to either input a pre-existing cache directory or to download the cache with the module. Do I need to somehow specifically mount the cache directory?
👀 1
m
Maxime Garcia
11/07/2025, 3:09 PMNextflow should do it properly for you
Maxime Garcia
11/07/2025, 3:10 PMI have used a setup in both Sarek and rnavar that allow for both local, cloud hosted cache on #C05DACM4HPV or download