Hi! I ran this pipeline for the first time today and the outputs don't have any variant info in it. Attaching two images 1) showing the set of tasks that were run successfully and 2) showing the output directories. What should I change to get variant info out? I called the pipeline with very minimal parameters set so mainly defaults are being used

Hi! What version of the pipeline did you run?

Hi Nicolas! I ran ------------------------------------------------------ ,--./,-. _ _ _ __ _ /,-._.--~' |\ | |__ _ / ` / \ |_) |__ } { | \| | \__, \__/ | \ |___ \`-._,-

-,

.,.,' nf-core/rnavar 1.2.0 ------------------------------------------------------

Yes the issue you had has been fixed in 1.2.1 😛

I have used 1.2.1 and still gets no variants call. Everything is empty.

Can you post your command here? 🙂

That was related to my bam file. I have fixed that. It was not related to pipeline itself thanks.

Awesome!