Is it better to modify and utilize this bash scrip...
# variantprioritizationf
Famke Bäuerle
10/29/2025, 2:17 PMIs it better to modify and utilize this bash script here https://sigven.github.io/pcgr/articles/installation.html#vep-cache or make use of the ENSEMBLVEP_DOWNLOAD module? I am a bit torn between the two but I would like to have automation for the addition of the cache.
Famke Bäuerle
10/29/2025, 2:28 PMI think I am opting for the module
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Maxime Garcia
10/29/2025, 3:09 PMwhich VEP cache do you need?
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Famke Bäuerle
10/29/2025, 3:15 PM113
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Maxime Garcia
10/29/2025, 3:37 PMwhy not using #C05DACM4HPV?
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Famke Bäuerle
10/29/2025, 3:38 PMI do not understand how it works / but I am happy to use that. I think we need a way to also just download once and keep it and not stage the cache in every run?
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Maxime Garcia
10/29/2025, 3:40 PMBasically it's already downloaded with annotation cache, so you just let nextflow handle the files
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Famke Bäuerle
10/29/2025, 3:40 PMok? so no need to add any module? just the s3 bucket link?
Famke Bäuerle
10/29/2025, 3:41 PMbut how do I circumvent always needing to stage this? is it compatible with igenomes or a local copy?
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Maxime Garcia
10/29/2025, 3:42 PMcompatible with local copy, and works with its own bucket separate from igenomes, but later planned to be in references
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Maxime Garcia
10/29/2025, 3:43 PMMaxime Garcia
10/29/2025, 3:43 PMand you can still include the download module just in case
Maxime Garcia
10/29/2025, 3:43 PMWe can have a talk about it whenever
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Famke Bäuerle
10/29/2025, 3:44 PMokokokok
Famke Bäuerle
10/29/2025, 3:44 PMI am tired and I want the references handled for me pls release now with VEP CACHE meow coffee
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Maxime Garcia
10/29/2025, 3:45 PMlool
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Famke Bäuerle
10/29/2025, 3:45 PMsarek wine