A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

cli.yml

launch:
  - name: "rnaseq-test"
    workspace: "nf-core/ResourceOptimization"
    compute-env: "aws_ireland_fusionv2_nvme_cpu_snapshots"
    pipeline: "<https://github.com/nf-core/rnaseq>"
    revision: "3.21.0"
    labels: "testPreOpt"
    profile: "test"
    work-dir: "<s3://nf-core-awsmegatests/resource_optimizations/work>"
    params:
      outdir: "<s3://nf-core-awsmegatests/resource_optimizations/rnaseq/test/not_optimized>"