Hello team!
First of all, huge congratulations on ...
# viralrecong
German Vallejo
10/28/2025, 8:12 PMHello team!
First of all, huge congratulations on the amazing work with the new ViralRecon 3.0.0 release! The update looks fantastic with all the improvements and new features.
I have a question about a change we noticed: we're participating in a hackathon with two collaborators and have been developing a subworkflow that depends on the ABACAS consensus fasta as input.
With the new version, it seems this output is no longer available or has been modified. Could you please confirm:
1. Was the removal of the ABACAS consensus fasta intentional?
2. Is it possible to recover/reincorporate this functionality?
Thank you so much in advance for your help! We're really excited about the hackathon and want to make sure our subworkflow is compatible with the latest version.
s
Sarai
10/29/2025, 7:44 AMIt is not supposed to be removed
Sarai
10/29/2025, 7:45 AMYou ran it and it is not longer there?
Sarai
10/29/2025, 7:45 AMI mean, I can see it in the code
Sarai
10/29/2025, 7:46 AMI can see it in the results folder too
Sarai
10/29/2025, 7:46 AMWere did you see that it has been remvoed?
Sarai
10/29/2025, 7:50 AMEvery time nf-core modules update there are some changes in how the input/output of modules are used so you might be adapting your subworkflow to that, as it is the nf-core's module ABACAS it is not a local module
Sarai
10/29/2025, 7:50 AMIf you need any help with that we can arrange a huddle
Sarai
10/29/2025, 7:55 AMYou can see here that it was updated 3 months ago in the modules:
https://github.com/nf-core/modules/commit/e2684f20ddc22b76879d4d9afdf12180036c6ca0
And we merge that in viralrecon
devdevmaina
alessio vignoli
10/29/2025, 8:52 AMcongratulation for the release, sorry it was my bad yesterday i could not find ABACAS process call. found it now. I’ll try to have as much as of a finished subworkflow out today for the end of the Hackaton.
s
Sarai
10/29/2025, 10:17 AMNo worries! I was worried that I made something wrong on the release! It was my first release too, so I was afraid of having missing something important!
Take it easy! If you need a huddle or something let me know and I can join your project channel and have a huddle there!
🙌 1