James Fellows Yates
10/28/2025, 2:01 PMbin Depth test_minigut Depth test_minigut_sample2 Bin Id_checkm Marker lineage_checkm # genomes_checkm # markers_checkm # marker sets_checkm Completeness_checkm Contamination_checkm Strain heterogeneity_checkm Coding density_checkm Translation table_checkm # predicted genes_checkm 0_checkm 1_checkm 2_checkm 3_checkm 4_checkm 5+_checkm Name_checkm2 Completeness_checkm2 Contamination_checkm2 Completeness_Model_Used_checkm2 Translation_Table_Used_checkm2 Coding_Density_checkm2 Total_Coding_Sequences_checkm2 Name Assembly_quast # contigs (>= 0 bp)_quast # contigs (>= 1000 bp)_quast # contigs (>= 5000 bp)_quast # contigs (>= 10000 bp)_quast # contigs (>= 25000 bp)_quast # contigs (>= 50000 bp)_quast Total length (>= 0 bp)_quast Total length (>= 1000 bp)_quast Total length (>= 5000 bp)_quast Total length (>= 10000 bp)_quast Total length (>= 25000 bp)_quast Total length (>= 50000 bp)_quast # contigs_quast Largest contig_quast Total length_quast GC (%)_quast N50_quast N75_quast L50_quast L75_quast # N's per 100 kbp_quast # predicted rRNA genes_quast user_genome_gtdbtk classification_gtdbtk closest_genome_reference_gtdbtk closest_genome_reference_radius_gtdbtk closest_genome_taxonomy_gtdbtk closest_genome_ani_gtdbtk closest_genome_af_gtdbtk closest_placement_reference_gtdbtk closest_placement_radius_gtdbtk closest_placement_taxonomy_gtdbtk closest_placement_ani_gtdbtk closest_placement_af_gtdbtk pplacer_taxonomy_gtdbtk classification_method_gtdbtk note_gtdbtk other_related_references(genome_id,species_name,radius,ANI,AF)_gtdbtk msa_percent_gtdbtk translation_table_gtdbtk red_value_gtdbtk warnings_gtdbtk bin_catpack CAT_rank_catpack