A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi folks, sorry, not attending any hackathons, just wanted to chime in here about the conda packaging of PCGR (<https://nfcore.slack.com/archives/CM46YC6BZ/p1761652311161549>).
I’ve just added a response at <https://github.com/sigven/pcgr/issues/283#issuecomment-3456190436> about the underlying structure of PCGR, so it’s a bit more complicated to condarise than a typical Python or R package.
I’m in Melbourne Australia so the timezone is slightly difficult to coordinate over, but happy to see what I can do in the next few days to help with this.

Re: the bioconda PR, yeah that recipe won’t work with the bioconda CI checks since it’s meant to work using the PCGR GitHub source repo (that’s why I have the `source.path: ../../..` part).
Instead, take a look at another bioconda python pkg e.g. one that is currently under review at <https://github.com/bioconda/bioconda-recipes/pull/60169/files>

(forgot to tag you <@U09LEAKU19C>)
I’ll get back to this from tomorrow :slightly_smiling_face: