<!here> there seems to be an issue in nf-schema wh...
# nf-schema
n
<!here> there seems to be an issue in nf-schema when validating glob patterns using the new Nextflow version. I'm aware of this problem and will try and get a fix out soon. Please refrain from updating your Nextflow version for now if you rely on glob patterns in your pipeline
this is fine fire 2
maxime 1
Credits to @Maxime Garcia for reporting this 😛
m
I am good at finding bugs
n
Thanks!
And that's true!!!
m

https://www.youtube.com/watch?v=BuCdLAHP9vo▾

🤣 1
Do I get a sticker for bug discovery?
n
I should really make some 🤣
m
To be honest I would have not realized that when making a sarek release and a failure with the known_indels when doing a megatest, it's a luck I added this test in references
m
any idea why this wasn't caught in #C08Q87QJRLM?
m
yes
we don't test for that
it's a very specific pattern
👍🏻 1
I think we're only a few people using that particular pattern to be honest, but it is central to sarek
n
Yeah it's curious! I'll fix it soon
m
Thanks a lot
n
The issue is related to the combination of globbing patterns with the
exists
keyword in the JSON schema. You can safely update your Nextflow version if you don't use that combination in your pipeline. Working on a fix now and hope to have it out tomorrow
🙏 1