Gisela Gabernet
10/21/2025, 5:12 PMnf-core pipelines lint locally than on the CI tests even though I updated to the latest nf-core tools version:
nf-core pipelines lint
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nf-core/tools version 3.4.1 - <https://nf-co.re>
WARNING Found unrecognised test name 'included_configs' in pipeline lint config
INFO Testing pipeline: .
Running lint checks ━━━━━━━━━━━━━━━╺━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4 of 27 » files_unchangedINFO Saving metadata file to '/tmp/tmpdqfmmz13/nf-core-airrflow'
<...>
╭───────────────────────╮
│ LINT RESULTS SUMMARY │
├───────────────────────┤
│ [✔] 670 Tests Passed │
│ [?] 6 Tests Ignored │
│ [!] 79 Test Warnings │
│ [✗] 0 Tests Failed │
╰───────────────────────╯
But I have a failure on the CI, which also runs v3.4.1
╭─ [✗] 1 Pipeline Test Failed ─────────────────────────────────────────────────╮
│ │
│ files_unchanged: .github/PULL_REQUEST_TEMPLATE.md does not match the │
│ template │
│ │
╰──────────────────────────────────────────────────────────────────────────────╯
╭───────────────────────╮
│ LINT RESULTS SUMMARY │
├───────────────────────┤
│ [✔] 669 Tests Passed │
│ [?] 6 Tests Ignored │
│ [!] 79 Test Warnings │
│ [✗] 1 Test Failed │
╰───────────────────────╯