Hi, I’m trying to run scrnaseq with cellrangermult...
# scrnaseqj
Jun-Hoe Lee
10/14/2025, 2:46 PMHi, I’m trying to run scrnaseq with cellrangermulti mode and wondering if “beam” feature type is supported. The website says “beam” is not currently supported, but i find mentions of beam files and features here: https://github.com/nf-core/scrnaseq/issues/480 and here https://github.com/nf-core/scrnaseq/pull/276.
Jun-Hoe Lee
10/14/2025, 2:47 PMBut when I try to run with the current (v 4.0.0) and dev version, it throws out the following error:
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* --input (/sfs/9/ws/qeajl01-QVIXC_scrnaseq/data/sample_sheet_cellranger_3.csv): Validation of file failed:
-> Entry 13: Error for field 'feature_type' (beam): Expected any of [[gex, vdj, ab, crispr, cmo]]
-> Entry 14: Error for field 'feature_type' (beam): Expected any of [[gex, vdj, ab, crispr, cmo]]
-> Entry 15: Error for field 'feature_type' (beam): Expected any of [[gex, vdj, ab, crispr, cmo]]
-> Entry 16: Error for field 'feature_type' (beam): Expected any of [[gex, vdj, ab, crispr, cmo]]Jun-Hoe Lee
10/14/2025, 2:47 PMThanks for any information!