A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hello! The <!subteam^S08LAB76NBU> plan is to release a new version of nf-core/tools before the hackathon, and if everything goes as expected we will start testing it next week.
To try and make the template updates smoother and pick up possible errors beforehand, we are introducing a testing step where we will ask for a volunteer to do a template update and report their experience or possible errors before we trigger the sync PRs to all pipelines.
Who wants to ~sacrifice their first born~ volunteer their pipeline for this?

<#C01NHS4CC91|> and <#CGFUX04HZ|> volunteer

<@UE6D8290F> we just triggered a sync PR to rnavar and sarek

<@UEM37TBAR> we just triggered a sync PR to cratetaxdb

you will receive PRs very soon! you can go through the template update and let us know if you find something suspicious :eyes:

Once I've done createtaxdb, and all fine, maybe do mag too

please let me do resolve of merge conflicts in createtaxdb so we can record them :slightly_smiling_face:

I let you do that, and you send me draft and I try to appl yto mag?

<https://deploy-preview-3565--nf-core-main-site.netlify.app/blog/2025/tools-3_4_0>

On my todo for tomorrow! Kid caring time now

we are anyway working on a patch release for tomorrow (shouldn't affect anything on your side)

I was in a meeting the whole afternoon, sorry I couldn't look at it

Btw <@UQZG2UCF3> I find the blog post really hard to read

image.png

e.g. when I read the 'resolution' section of ,nf-core.yaml I think the website is just rendering halfway the lines for the awstest.yml file wierdly

better? <https://deploy-preview-3565--nf-core-main-site.netlify.app/blog/2025/tools-3_4_0#getting-help-to-update-your-pipeline-template>

Better! I would maybe put `**Description**` above each description, so you can better see the difference between that and the `Resolution`

Otherwise I find it much easier to comparmentalise :slightly_smiling_face: