Good afternoon. I want to merge https://github.com/nf-core/modules/pull/9033 as is, but there are failure. I don't think we can fix them all, and I have pestered @Matthias De Smet enough. I was wondering about adding these tests to the ignore conda list, and create issue to remember about it. Yeah party dead or nay ohno2

only conda tests fail so I don't see any problems 😉

create issue to remember about it

You mean completely ignore it forevermore?

nope

I purely don't want this merged so we can release sarek first 😛

shall we create an issue to remind us about the issue?

Related to the issues in this PR, I’m looking into

manta

. It appears there’s an older build of the container used in the module. I also notice

manta/convertinversion

has a requirement for

samtools

, solely for the sake of a tabix index. @Rike Hanssen, since you’re the maintainer and only known user of this module, how would you feel if I drop the

tabix

and

*.tbi

output from this module, for the sake of simplicity? Nevermind, the python script also depends on samtools

I was about to say NO

I’m preparing another PR that bumps

manta

to the latest build and pins the python version, which I hope will fix the

libboost

error

ok so only failures with conda/gatk left

wonderful recap