nextflow: 25.04.7 build 5955 nf-core: 3.3.2 nf-tes...
# tools
t
nextflow: 25.04.7 build 5955 nf-core: 3.3.2 nf-test: 0.9.2 OS: OSX Sequoia 15.4 (24E248) Python: 3.13.7 When I try to run
nf-core modules test
, I get the following error:
Copy code
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /Users/lamnidis/miniconda3/envs/nf-core/bin/nf-core:10 in <module>                               │
│                                                                                                  │
│    7                                                                                             │
│    8 if __name__ == '__main__':                                                                  │
│    9 │   sys.argv[0] = re.sub(r'(-script\.pyw?|\.exe)?$', '', sys.argv[0])                       │
│ ❱ 10 │   sys.exit(run_nf_core())                                                                 │
│   11                                                                                             │
│                                                                                                  │

[ ... ]

│ /Users/lamnidis/miniconda3/envs/nf-core/lib/python3.13/site-packages/questionary/prompts/common. │
│ py:591 in _fix_unecessary_blank_lines                                                            │
│                                                                                                  │
│   588 │   default_container = ps.layout.container                                                │
│   589 │                                                                                          │
│   590 │   default_buffer_window = (                                                              │
│ ❱ 591 │   │   default_container.get_children()[0].content.get_children()[1].content  # type: i   │
│   592 │   )                                                                                      │
│   593 │                                                                                          │
│   594 │   assert isinstance(default_buffer_window, Window)                                       │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
AttributeError: 'VSplit' object has no attribute 'content'
I’ve tried this with
freebayes
and
angsd/docounts
to the same error. Any idea what might be causing this? (Full error attached due to character limits.)