Thiseas C. Lamnidis
09/16/2025, 8:39 AMnf-core modules test , I get the following error:
╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮
│ /Users/lamnidis/miniconda3/envs/nf-core/bin/nf-core:10 in <module> │
│ │
│ 7 │
│ 8 if __name__ == '__main__': │
│ 9 │ sys.argv[0] = re.sub(r'(-script\.pyw?|\.exe)?$', '', sys.argv[0]) │
│ ❱ 10 │ sys.exit(run_nf_core()) │
│ 11 │
│ │
[ ... ]
│ /Users/lamnidis/miniconda3/envs/nf-core/lib/python3.13/site-packages/questionary/prompts/common. │
│ py:591 in _fix_unecessary_blank_lines │
│ │
│ 588 │ default_container = ps.layout.container │
│ 589 │ │
│ 590 │ default_buffer_window = ( │
│ ❱ 591 │ │ default_container.get_children()[0].content.get_children()[1].content # type: i │
│ 592 │ ) │
│ 593 │ │
│ 594 │ assert isinstance(default_buffer_window, Window) │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
AttributeError: 'VSplit' object has no attribute 'content'
I’ve tried this with freebayes and angsd/docounts to the same error.
Any idea what might be causing this?
(Full error attached due to character limits.)