Hi folks! I'm seeing some strange behavior in the

pipelines download

in our release CI. It seems it is not related to what is mentioned above (though I may be wrong). The download works fine, but when it is running the pipeline it complains that

stat /bin/bash: no such file or directory

. I am unable to replicate this locally, running the exact same commands and containers as in the CI workflow. Here is a link to the failing job: https://github.com/nf-core/pixelator/actions/runs/17377144849/job/49340066876?pr=149 Does anyone have any idea about what's going on here?

Thanks Maxime. But I don't think that the issue since in CI we are running:

N E X T F L O W  ~  version 25.04.6

, which if I understand the link you sent and the message above is the required version.

indeed, the error looks different

Exactly. I get the impression that bash would be missing from the container, but running locally with the same containers using singularity seems to work just fine.

Also hit the same error, I’ve posted a small reproducible example over in nf-core/tools#3742

That does indeed seem to be the exact same issue. Thanks Stephen. I'll subscribe to it on Github.

Matthias already put the

high-priority

label