GitHub
08/18/2025, 2:45 PMsanger.conf to handle the new strict config syntax (https://nextflow.io/docs/latest/strict-syntax.html#configuration-syntax).
• moves farm22/tol22 specific config to separate subconfig files
• these config files are included using a closure which first determines which cluster you are on
• Add default values for cpus, memory, and time (otherwise processes fail if these are not set)
• moved executor.poolSize to poolSize, which is the correct name for this option
Have tested this on tol22 and it seems to work correctly.
nf-core/configsGitHub
08/19/2025, 8:25 AM