Hi, it is my first time trying to version bump a m...
# modules
t
Hi, it is my first time trying to version bump a module. When I do
Copy code
nf-core modules bump-versions kma/kma
I get the error
Copy code
╭──────────────────────────────────────────────────────────────────────────────────────────────────╮
│ [!] 1 Module update failed                                                                       │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
╭──────────────────────────────────────────┬───────────────────────────────────────────────────────╮
│ Module name                              │ Update message                                        │
├──────────────────────────────────────────┼───────────────────────────────────────────────────────┤
│ kma/kma                                  │ Conda version not specified correctly:                │
│                                          │ modules/nf-core/kma/kma/main.nf                       │
╰──────────────────────────────────────────┴───────────────────────────────────────────────────────╯
However, the conda env declaration in modules/nf-core/kma/kma/main.nf looks pretty standard to me. I even tried to specify the conda version manually within the .nf-core.yml as suggested at here, on the nf-core website. Still failing. Any idea what's going on?
I even tried to trick the system and replaced the
conda environment.yml
with
conda bioconda::kma=1.5.0
. Still no success.
j
I have a feeling I tried that a while ago and also didn't work either... Maybe you can post on #CE5LG7WMB ? Although both Júlia and Matthias are on holiday at the moment 😱
m
Can you share your environment.yml or even better the PR with failing linting
m
Then why bump the version?
🤔 1
(Also this specific module should just trigger

https://youtu.be/JmcA9LIIXWw▾

)
t
Because 1.5.1 is available and I am about to include kma into a workflow and thought this might be a good opportunity to bump version before I do
j
It's not on bioconda though
Is it?
t
it is
j
image.png
👀 1
OH huh you're right
that's odd
t
conda search -c bioconda kma
j
Normally website is fast to update
t
returns 1.5.1
the release is from May 22nd (according to GitHub)
j
and updated on bioconda 2 weeks ago... 🤔
I'll ask on the bioconda channle
OK yeah their website gen github action was deactivated 😅
Björn reactivated it!
👀 1
thanks 1
t
okay, I'll try again later. However, I have this feeling that it was not about that. I would have expected a message like "Already up-to-date" or smt
👍 1