Hi, I have a few WGS tumor only samples(dragen generated bam files) will the oncoanalyser be able to process it skipping the initial alignment steps and Redux step?.
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Oliver Hofmann
07/31/2025, 12:07 AM
You can skip alignment but generally it's not recommended to skip Redux — it doesn't just mark duplicates.
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Rajdeep Raha
08/01/2025, 10:51 AM
thank you for the reply. will get back if i face any issues