Josué Guzmán
07/22/2025, 11:37 PMnextflow run nf-core/raredisease \
-profile docker \
--input ../extra/PRJNA1077459_sheet.csv \
--outdir ../nfcore_raredisease_results \
--genome GRCh38 \
--save_reference \
--analysis_type wes \
-resume \
&& echo -e "pipeline executed successfully"
but i got the error
ERROR ~ Validation of pipeline parameters failed!
-- Check '.nextflow.log' file for details
The following invalid input values have been detected:
* Missing required parameter(s): intervals_wgs, intervals_y, fasta
what im missing? Its supposed that the parameter --genome GRCh38 downloads all the required files but it is not doing it