Is there a way to pull Sample Name from the log filename for custom content where the data is outside the config. Something like:

custom_data:
  three_prime_alignments:
    file_format: "tsv"
    use_filename_as_sample_name: True
    section_name: "Custom Section"
    description: "Detailed Description"
    plot_type: "bargraph"
    pconfig:
      id: "custom_section"
      title: "Custom Plot"
      ylab: "Primary Count"

sp:
  custom_section:
    fh: "*.custom_metrics.tsv"

I've also tried something like:

custom_data:
  three_prime_alignments:
    file_format: "tsv"
    section_name: "Custom Section"
    description: "Detailed Description"
    plot_type: "bargraph"
    pconfig:
      id: "custom_section"
      title: "Custom Plot"
      ylab: "Primary Count"

use_filename_as_sample_name:
  - custom_section

sp:
  custom_section:
    fh: "*.custom_metrics.tsv"

This leaves me with a sample name of

0

. Not sure if I'm putting

use_filename_as_sample_name

in the wrong spot, specifying the custom_section incorrectly, or if this isn't supported.

Can you share an example file? Custom content is a complex beast in how it parses data.

Thank you, I'll get an example put together and posted there. Go back to vacation! 🏖️